first commit

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Evghenii
2014-01-29 12:15:13 +01:00
parent cb436d5b4a
commit 07c845be03

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@@ -0,0 +1,370 @@
#include "cuda_helpers.cuh"
#include <cassert>
#define NUMBITS 8
#define NUMDIGITS (1<<NUMBITS)
typedef long long Key;
__device__ int atomic_add_global(int* ptr, int value)
{
return atomicAdd(ptr, value);
}
static __device__ __forceinline__ int shfl_scan_add_step(int partial, int up_offset)
{
int result;
asm(
"{.reg .u32 r0;"
".reg .pred p;"
"shfl.up.b32 r0|p, %1, %2, 0;"
"@p add.u32 r0, r0, %3;"
"mov.u32 %0, r0;}"
: "=r"(result) : "r"(partial), "r"(up_offset), "r"(partial));
return result;
}
__device__ int exclusive_scan_add(int value)
{
int mysum = value;
#pragma unroll
for(int i = 0; i < 5; ++i)
mysum = shfl_scan_add_step(mysum, 1 << i);
return mysum;
}
__global__
void countPass(
const Key keysAll[],
Key sortedAll[],
const int bit,
const int numElements,
int countsAll[],
int countsGlobal[])
{
const int blkIdx = taskIndex;
const int numBlocks = taskCount;
const int blkDim = (numElements + numBlocks - 1) / numBlocks;
const int mask = (1 << NUMBITS) - 1;
const Key * keys = keysAll + blkIdx*blkDim;
Key * sorted = sortedAll + blkIdx*blkDim;
int * counts = countsAll + blkIdx*NUMDIGITS;
const int nloc = min(numElements - blkIdx*blkDim, blkDim);
for (int digit = programIndex; digit < NUMDIGITS; digit += programCount)
counts[digit] = 0;
for (int i = programIndex; i < nloc; i += programCount)
if (i < nloc)
{
sorted[i] = keys[i];
const int key = mask & ((unsigned int)keys[i] >> bit);
atomic_add_global(&counts[key], 1);
}
for (int digit = programIndex; digit < NUMDIGITS; digit += programCount)
atomic_add_global(&countsGlobal[digit], counts[digit]);
}
__global__
void sortPass(
Key keysAll[],
Key sorted[],
int bit,
int numElements,
int digitOffsetsAll[])
{
const int blkIdx = taskIndex;
const int numBlocks = taskCount;
const int blkDim = (numElements + numBlocks - 1) / numBlocks;
const int keyIndex = blkIdx * blkDim;
Key * keys = keysAll + keyIndex;
const int nloc = min(numElements - keyIndex, blkDim);
const int mask = (1 << NUMBITS) - 1;
const int unitScan = exclusive_scan_add(1);
/* copy digit offset from Gmem to Lmem */
__shared__ int digitOffsets[NUMDIGITS];
for (int digit = programIndex; digit < NUMDIGITS; digit += programCount)
digitOffsets[digit] = digitOffsetsAll[blkIdx*NUMDIGITS + digit];
for (int i = programIndex; i < nloc; i += programCount)
if (i < nloc)
{
const int key = mask & ((unsigned int)keys[i] >> bit);
int scatter;
/* not a vector friendly loop */
for (int lane = 0; lane < programCount; lane++)
if (programIndex == lane)
scatter = digitOffsets[key]++;
sorted [scatter] = keys[i];
}
}
__global__
void partialScanLocal(
int numBlocks,
int excScanAll[],
int countsAll[],
int partialSumAll[])
{
const int blkIdx = taskIndex;
const int blkDim = (numBlocks+taskCount-1)/taskCount;
const int bbeg = blkIdx * blkDim;
const int bend = min(bbeg + blkDim, numBlocks);
int (* countsBlock)[NUMDIGITS] = ( int (*)[NUMDIGITS])countsAll;
int (* excScanBlock)[NUMDIGITS] = ( int (*)[NUMDIGITS])excScanAll;
int (* partialSum)[NUMDIGITS] = ( int (*)[NUMDIGITS])partialSumAll;
for (int digit = programIndex; digit < NUMDIGITS; digit += programCount)
{
int prev = bbeg == 0 ? excScanBlock[0][digit] : 0;
for ( int block = bbeg; block < bend; block++)
{
const int y = countsBlock[block][digit];
excScanBlock[block][digit] = prev;
prev += y;
}
partialSum[blkIdx][digit] = excScanBlock[bend-1][digit] + countsBlock[bend-1][digit];
}
}
__global__
void partialScanGlobal(
const int numBlocks,
int partialSumAll[],
int prefixSumAll[])
{
int (* partialSum)[NUMDIGITS] = ( int (*)[NUMDIGITS])partialSumAll;
int (* prefixSum)[NUMDIGITS] = ( int (*)[NUMDIGITS]) prefixSumAll;
const int digit = taskIndex;
int carry = 0;
for (int block = programIndex; block < numBlocks; block += programCount)
if (block < numBlocks)
{
const int value = partialSum[block][digit];
const int scan = exclusive_scan_add(value);
prefixSum[block][digit] = scan + carry;
carry += __shfl(scan+value, programCount-1);
}
}
__global__
void completeScanGlobal(
int numBlocks,
int excScanAll[],
int carryValueAll[])
{
const int blkIdx = taskIndex;
const int blkDim = (numBlocks+taskCount-1)/taskCount;
const int bbeg = blkIdx * blkDim;
const int bend = min(bbeg + blkDim, numBlocks);
int (* excScanBlock)[NUMDIGITS] = ( int (*)[NUMDIGITS])excScanAll;
int (* carryValue)[NUMDIGITS] = ( int (*)[NUMDIGITS])carryValueAll;
for (int digit = programIndex; digit < NUMDIGITS; digit += programCount)
{
const int carry = carryValue[blkIdx][digit];
for ( int block = bbeg; block < bend; block++)
excScanBlock[block][digit] += carry;
}
}
__device__ static
inline void radixExclusiveScan(
const int numBlocks,
int excScanPtr[],
int countsPtr[],
int partialSum[],
int prefixSum[])
{
const int scale = 8;
launch (numBlocks/scale, 1,1, partialScanLocal)(numBlocks, excScanPtr, countsPtr, partialSum);
sync;
launch (NUMDIGITS,1,1,partialScanGlobal) (numBlocks/scale, partialSum, prefixSum);
sync;
launch (numBlocks/scale,1,1, completeScanGlobal) (numBlocks, excScanPtr, prefixSum);
sync;
}
__device__ static int * memoryPool = NULL;
__device__ static int numBlocks;
__device__ static int nSharedCounts;
__device__ static int nCountsGlobal;
__device__ static int nExcScan;
__device__ static int nCountsBlock;
__device__ static int nPartialSum;
__device__ static int nPrefixSum;
__device__ static int * sharedCounts;
__device__ static int * countsGlobal;
__device__ static int * excScan;
__device__ static int * counts;
__device__ static int * partialSum;
__device__ static int * prefixSum;
__device__ static int numElementsBuf = 0;
__device__ static Key * bufKeys;
__global__
void radixSort_alloc___export(const int n)
{
assert(memoryPool == NULL);
numBlocks = 13*32*4;
nSharedCounts = NUMDIGITS*numBlocks;
nCountsGlobal = NUMDIGITS;
nExcScan = NUMDIGITS*numBlocks;
nCountsBlock = NUMDIGITS*numBlocks;
nPartialSum = NUMDIGITS*numBlocks;
nPrefixSum = NUMDIGITS*numBlocks;
const int nalloc =
nSharedCounts +
nCountsGlobal +
nExcScan +
nCountsBlock +
nPartialSum +
nPrefixSum;
if (programIndex == 0)
memoryPool = new int[nalloc];
union {int* ptr; int val[2];} t;
t.ptr = memoryPool;
t.val[0] = __shfl(t.val[0], 0);
t.val[1] = __shfl(t.val[1], 0);
memoryPool = t.ptr;
sharedCounts = memoryPool;
countsGlobal = sharedCounts + nSharedCounts;
excScan = countsGlobal + nCountsGlobal;
counts = excScan + nExcScan;
partialSum = counts + nCountsBlock;
prefixSum = partialSum + nPartialSum;
}
extern "C" __global__
void radixSort_alloc(const int n)
{
radixSort_alloc___export<<<1,32>>>(n);
sync;
}
__device__ static
void radixSort_freeBufKeys()
{
if (numElementsBuf > 0)
{
delete bufKeys;
numElementsBuf = 0;
}
}
__global__ void radixSort_free___export()
{
assert(memoryPool != NULL);
if (programIndex == 0)
delete memoryPool;
memoryPool = NULL;
radixSort_freeBufKeys();
}
extern "C" __global__
void radixSort_free()
{
radixSort_free___export<<<1,32>>>();
sync;
}
__global__ void radixSort___export(
const int numElements,
Key keys[],
const int nBits)
{
#ifdef __NVPTX__
assert((numBlocks & 3) == 0); /* task granularity on Kepler is 4 */
#endif
if (numElementsBuf < numElements)
radixSort_freeBufKeys();
if (numElementsBuf == 0)
{
numElementsBuf = numElements;
if (programIndex == 0)
bufKeys = new Key[numElementsBuf];
union {Key* ptr; int val[2];} t;
t.ptr = bufKeys;
t.val[0] = __shfl(t.val[0], 0);
t.val[1] = __shfl(t.val[1], 0);
bufKeys = t.ptr;
}
const int blkDim = (numElements + numBlocks - 1) / numBlocks;
for ( int bit = 0; bit < nBits; bit += NUMBITS)
{
/* initialize histogram for each digit */
for (int digit = programIndex; digit < NUMDIGITS; digit += programCount)
countsGlobal[digit] = 0;
/* compute histogram for each digit */
launch (numBlocks,1,1, countPass)(keys, bufKeys, bit, numElements, counts, countsGlobal);
sync;
/* exclusive scan on global histogram */
int carry = 0;
excScan[0] = 0;
for (int digit = programIndex; digit < NUMDIGITS; digit += programCount)
{
const int value = countsGlobal[digit];
const int scan = exclusive_scan_add(value);
excScan[digit] = scan + carry;
carry += __shfl(scan+value, programCount-1);
}
/* computing offsets for each digit */
radixExclusiveScan(numBlocks, excScan, counts, partialSum, prefixSum);
/* sorting */
launch (numBlocks,1,1,
sortPass)(
bufKeys,
keys,
bit,
numElements,
excScan);
sync;
}
}
extern "C" __global__
void radixSort(
const int numElements,
Key keys[],
const int nBits)
{
radixSort___export<<<1,32>>>(numElements, keys, nBits);
sync;
}